PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc032928.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 163aa    MW: 17447.4 Da    PI: 7.9688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc032928.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19856355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr +  +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Itr_sc032928.1_g00001.1  8 FRGVRKRQ-WGRYAAEIRDP---GKKNRVWLGTFDTAEEAARAYDAAARQFRG 56
                             8****888.**********8...5579***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-18664No hitNo description
PROSITE profilePS5103223.591764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32764IPR001471AP2/ERF domain
SMARTSM003801.4E-38770IPR001471AP2/ERF domain
PfamPF008476.4E-13856IPR001471AP2/ERF domain
PRINTSPR003671.6E-10819IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22865IPR016177DNA-binding domain
PRINTSPR003671.6E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
GSDYTANFRG VRKRQWGRYA AEIRDPGKKN RVWLGTFDTA EEAARAYDAA ARQFRGPKAK  60
TNFPLPSENH SPSHSNIVES SASSTSCATS VSVRLDLSIT GFPWRGDPAT GVPVPVLPKC  120
AAPVCAAHSD SDSSSVVDES HFDAGLAKKC LNLDLNLAPP MES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19765261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19765564ATERF1
3gcc_A2e-19765564ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595390.14e-40PREDICTED: ethylene-responsive transcription factor 4
RefseqXP_009609806.14e-40PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW492e-41ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLE7FKW02e-39E7FKW0_TOBAC; Ethylene response factor 3b
STRINGSolyc10g009110.1.16e-37(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-25erf domain protein 9